PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037441m | ||||||||
Common Name | CISIN_1g037441mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 40713.2 Da PI: 8.4412 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.8e-12 | 186 | 232 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L +lP + kK++Ka++L A++Y+k+Lq orange1.1g037441m 186 DHIMAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIRYVKELQ 232 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.186 | 182 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-16 | 186 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 186 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-12 | 187 | 236 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-16 | 187 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-14 | 188 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MDASSAKWLA ELGMDEYNII HQCHMESVAD LFSSKQDITA ALGGNLKQSL STSESYSSYP 60 NNNNNGKSQT SFDERPNKLL KTYSWKSTTT TDRASADHSS PTPQPHFLNF DQKPISSNPN 120 KQLYGNLNMY SCSLKPKVEA PPSTGNTTSP PPFPPLGSQN YETVINPNHG TKRSYPVTRT 180 PALAQDHIMA ERKRREKLSQ RFIALSAILP GLKKMDKASV LGDAIRYVKE LQERVKVLEE 240 QTKKRTVESV VYVKKSQLVV SGTDDESSSC DDNSEISTSD ATLPEIEARV SDKDVLIRIH 300 CEKQKGLLPK LISQLEMLHL SITNTSVLPF GNSTLDITII ALKNAEFCTT MKDLVKDIRL 360 AFLKLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-13 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 195 | ERKRRE |
2 | 191 | 196 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024036203.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A067GGE0 | 0.0 | A0A067GGE0_CITSI; Uncharacterized protein | ||||
STRING | XP_006426181.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-67 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037441m |