PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29912_BGI-A2_v1.0
Common NameF383_08054
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 359aa    MW: 39892.1 Da    PI: 7.6327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29912_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14181227455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  h ++Er+RR+++N++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Cotton_A_29912_BGI-A2_v1.0 181 DHIMAERKRREKLNQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 227
                                 699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.923177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-18181240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-18181239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-14182231No hitNo description
SMARTSM003531.6E-15183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSSSAKWLS EQGMDEYDII HQCHMNSLAE LTPGEYITAT VLTGGNFKQS SFSSESYSSY  60
PNFNTKNNSV SSINEASDRP IKQLKTGTSW NSSTTTNIDH VPVPKKPSSP TSHILSFEKP  120
AASLPANSKQ LYGIDSIVKP KDETLCLGNN MNYFGPFQST NYTAKNSRSY SMTRSPSHAQ  180
DHIMAERKRR EKLNQRFIAL SAIVPGLKKM DKASVLGDAI KYVKQLQERL KVLEEQTKKR  240
TVESVVFVKK SQLLSADDES SSCEENSDGQ SSDAALPEIE AKVSDNDVLI RIHCEKHKGF  300
IAKILSEIEN LHLSIVNTNA LPFGNSTLDI TIIAQKDAEF NMTVKDLVKD LRMALLKFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13181244869Transcription factor MYC2
5gnj_B1e-13181244869Transcription factor MYC2
5gnj_E1e-13181244869Transcription factor MYC2
5gnj_F1e-13181244869Transcription factor MYC2
5gnj_G1e-13181244869Transcription factor MYC2
5gnj_I1e-13181244869Transcription factor MYC2
5gnj_M1e-13181244869Transcription factor MYC2
5gnj_N1e-13181244869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERKRRE
2186191RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622618.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2P5W3250.0A0A2P5W325_GOSBA; Uncharacterized protein
STRINGGorai.003G034700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-74bHLH family protein