PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g27680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 24960.8 Da PI: 10.1244 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.5e-13 | 69 | 116 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r h ++ErrRR+++ ++f L +++P + kK +Ka++L +++Y+k+Lq Tp3g27680 69 RDHIIAERRRREKLSQRFIALSTIVPGL-----KKTDKASVLGGTIRYLKHLQ 116 5699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.669 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-16 | 70 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 70 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-16 | 70 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.32E-12 | 71 | 120 | No hit | No description |
SMART | SM00353 | 3.8E-13 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEPQLYNHQS PVVTTLEAEA AKQLRPRSYT TNQSSSGFGE YGVMGNLQPK KESTLLAQRN 60 VSRGVSQARD HIIAERRRRE KLSQRFIALS TIVPGLKKTD KASVLGGTIR YLKHLQDRVR 120 FLEEQANHRT IESVVYLNKS MLSTADTEHD CVPLPEIEAR LSGKNVLIRV HCEKTKGVVE 180 ITMAEIEKLK LTVINSSVIT FGSNSLHLTI ISQVSFTFLI FI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 79 | ERRRRE |
2 | 75 | 80 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g27680 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627871.1 | 1e-133 | PREDICTED: transcription factor bHLH25-like | ||||
Swissprot | Q9T072 | 2e-45 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A3P6BEX6 | 1e-133 | A0A3P6BEX6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g088300.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-47 | bHLH family protein |