PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021208m | ||||||||
Common Name | CISIN_1g021208mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 35277.3 Da PI: 8.2341 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 145 | 192 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq orange1.1g021208m 145 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 192 5699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.777 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 146 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-17 | 146 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-16 | 146 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.92E-13 | 147 | 196 | No hit | No description |
SMART | SM00353 | 3.6E-14 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MEISSIKGLP ELGMEDLSFM NQWHMMNSID EFNLLPIAAA FGENLQHSYT HPSFNNNTGI 60 DRPQKQLKTS TWNSSETGFN PNNVSSINMN QMGILKPKQE TGAGYPSDIL PSQVSFGNNQ 120 NYVFKASQGA KRISPGAGNR LSNTQDHIIA ERKRREKLSQ RFIALSAIVP GLKKMDKASV 180 LGDAIKYLKQ LQEKVKILEE QANKKTIESV VFVNKTQLSD EGDNPNGAFN EALPEIEARF 240 CDKSVLIRVH CEKRKGVFEK IVAEIEKLHL TVINSSVMTF GSSVLDVTII AQMDVEFNMT 300 VKDLVKNLHS AFQLFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 146 | 195 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 146 | 195 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 146 | 195 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 146 | 195 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 146 | 195 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 146 | 195 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 146 | 195 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 146 | 195 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 155 | ERKRRE |
2 | 151 | 156 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006486799.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_015388301.1 | 0.0 | transcription factor bHLH25-like | ||||
TrEMBL | A0A067FXL5 | 0.0 | A0A067FXL5_CITSI; Uncharacterized protein | ||||
STRING | XP_006486799.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 7e-67 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021208m |