PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026436m | ||||||||
Common Name | CISIN_1g026436mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26644.4 Da PI: 8.8106 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.8 | 9.7e-14 | 58 | 104 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++N++f L l+P + kK +Ka+iL ++Y+k+Lq orange1.1g026436m 58 DHVIAERKRREKLNQRFIALSALVPGL-----KKTDKASILGDSIKYLKQLQ 104 6999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.967 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-11 | 58 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-17 | 58 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-18 | 58 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.52E-13 | 59 | 108 | No hit | No description |
SMART | SM00353 | 1.8E-15 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTSSPAPTVA GSSFHGNINS SSSLISQGSY LDQFCSKKKV QEPRRVSSVI RDPSHAQDHV 60 IAERKRREKL NQRFIALSAL VPGLKKTDKA SILGDSIKYL KQLQERVKAL EEQTSKKTVE 120 SMIIVKKSQM IYTDDETSPT DINFDAQSNQ YLPEIEVRVS DRDVLIRIHC EKNNNKGHLA 180 NILSEIENVH HLSVLSCNVL PFGNSTVDIT VVAQMDVESD VTVKDLVKNL QPALRKFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-14 | 58 | 107 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 5e-14 | 58 | 107 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 5e-14 | 58 | 107 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 5e-14 | 58 | 107 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 5e-14 | 58 | 107 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 5e-14 | 58 | 107 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 5e-14 | 58 | 107 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 5e-14 | 58 | 107 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 67 | ERKRRE |
2 | 63 | 68 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426180.2 | 1e-173 | transcription factor bHLH25 | ||||
Swissprot | Q9T072 | 1e-61 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A067GGN1 | 1e-174 | A0A067GGN1_CITSI; Uncharacterized protein | ||||
STRING | XP_006426180.1 | 1e-172 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026436m |