PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 36554.3 Da PI: 6.1813 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 145 | 191 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK +Ka++L A++Y+k+Lq Gh_A02G1415 145 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYMKQLQ 191 6999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.18 | 141 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 145 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-17 | 145 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.82E-12 | 146 | 195 | No hit | No description |
SuperFamily | SSF47459 | 7.59E-16 | 146 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-14 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEIVSNKWIS EVETVEDPTF FPQFAIPNMD YSFDDTNFQS FSSESYSSYP NINNGSSNIQ 60 AFHQVVDDNE FKRPMKQLKT DNNWNFSINE NIPPPPPPKA SSSSSPSSHI ISFHNSNPSP 120 AVSQQYYEVT KKVGSMTRTP LHAQDHVIAE RKRREKLSQR FISLSALIPG LKKTDKASVL 180 GDAIKYMKQL QEKVATLEEQ AAKKATESVI FVKKTQIYAD DETSSSDENF DSNQTNNKLF 240 PEIEARVSDK DVLIRIHCEK NKGFISNIMN EVEKLHLCVL NTNVLPFGQA TLDITIVAQM 300 EAEFSMTVKD LVKSLRLALL KFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 154 | ERKRRE |
2 | 150 | 155 | RKRREK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615207 | 0.0 | JX615207.1 Gossypium hirsutum clone NBRI_GE59073 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016723305.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1U8M968 | 0.0 | A0A1U8M968_GOSHI; transcription factor bHLH18-like | ||||
STRING | Gorai.003G034600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-66 | bHLH family protein |