PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g052840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 335aa    MW: 37696.2 Da    PI: 8.9363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g052840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12156202455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  Csa07g052840.1 156 DHILAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAIKHIKYLQ 202
                     5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-18156219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17156221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-12157206No hitNo description
SMARTSM003533.4E-15158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MATTTKNVFS TRWTSELDIE EYSIIHQYHM NSLAGDVPQS FSSLDDTTNC FNFDASCNND  60
LVEEIPSKIL KTTHISPKIH PFSSSIHTPP SKHQPSSRIL SFEKTGLKVM NHNSPNLIFS  120
PKEEEIELQD QRKSKLIIRG TKRAQTLTRS PSNAQDHILA ERKRREKLTQ RFVALSALVP  180
GLKKMDKASV LGDAIKHIKY LQEKVKEYEE QKQERTMESM VLVKKSQLVL DENHQSSSSF  240
SDGNRGCSSS NLPEIEVRLS GKDVLIKILC EKQKGNLIKI MGEIEKLGLL ITNSNVLPFG  300
PTFDISIIAQ RNINFDMKIE DVVKNLSCGL SKLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12156212864Transcription factor MYC2
5gnj_B2e-12156212864Transcription factor MYC2
5gnj_E2e-12156212864Transcription factor MYC2
5gnj_F2e-12156212864Transcription factor MYC2
5gnj_G2e-12156212864Transcription factor MYC2
5gnj_I2e-12156212864Transcription factor MYC2
5gnj_M2e-12156212864Transcription factor MYC2
5gnj_N2e-12156212864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERKRRE
2161166RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g052840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417032.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ1PF171e-162BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A3P6CFN30.0A0A3P6CFN3_BRACM; Uncharacterized protein
STRINGXP_010417032.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-161bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]