PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121613001
Common NameGSBRNA2T00121613001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 337aa    MW: 38167.7 Da    PI: 8.0053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121613001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12159205455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  GSBRNA2T00121613001 159 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 205
                          699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.811155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-16159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-10159205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-10160208No hitNo description
SuperFamilySSF474592.75E-16160223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-14161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MFSTRWFSEQ ELEENSIIQQ YQMNSRVGEI HEAQHNLPHS FSTLMAPTND PSYDDLIEIK  60
PSKILKTTYI SPKLPPPPSF PLPPNSKTYL HHQPSSRILS FENASPNGMD HEYAPTYLDS  120
FINPKVEDGV PPNRMNEPIN RKGTKRAQPL CRNQTNAQDH IIAERKRREK LTQRFVALSA  180
LVPGLKKMDK ASVLGDALKH IKYLQERVGE FEEQKRERRL ESVVLVKKSK LILDDNNQSS  240
SSSCCEDGSS GLELPEIEVK FSDKDVLIKI LCEKQKGHVA KIMAEIEKFN FSITNSSVLP  300
FGPTLDITII AKKESDFDMT LMDVVKSLRS ALSKFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13159215864Transcription factor MYC2
5gnj_B6e-13159215864Transcription factor MYC2
5gnj_E6e-13159215864Transcription factor MYC2
5gnj_F6e-13159215864Transcription factor MYC2
5gnj_G6e-13159215864Transcription factor MYC2
5gnj_I6e-13159215864Transcription factor MYC2
5gnj_M6e-13159215864Transcription factor MYC2
5gnj_N6e-13159215864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERKRRE
2164169RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121613001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891830.0AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132646.10.0PREDICTED: transcription factor bHLH25
SwissprotQ9T0720.0BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A398AI440.0A0A398AI44_BRACM; Uncharacterized protein
TrEMBLM4D5N30.0M4D5N3_BRARP; Uncharacterized protein
STRINGBra011790.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-162bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]