PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g044510.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 296aa MW: 33621.5 Da PI: 6.9672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g044510.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.3e-10	119	165	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L llP + kK +K+++L A+ +k+Lq Csa16g044510.1 119 EHVLAERKRREKLSEKFIALSALLPGL-----KKADKVTVLDDAISRMKQLQ 165 5899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.405	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	119	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-7	119	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-16	119	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.55E-10	120	169	No hit	No description
SMART	SM00353	2.7E-13	121	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEEDFRLADF SLENIDFDFN IYEENNLSAN EAGMDSKQAH RSSHFDHQMH LEFLGQKPKS 60 AVKPMMKINN NPRVISFDFS SNVSSSPAVE EIIMDQLVGR GTKRKTCSHG TRSPVLAKEH 120 VLAERKRREK LSEKFIALSA LLPGLKKADK VTVLDDAISR MKQLQEQLRK LKEEKEATRE 180 MESIILVKKS KVLYDDEPNL SSSPSYHNQF DQALPEIEAK VSQNDVLIRI HCEKSKGRMI 240 NILNTIENLQ LRIENSIVLP FGDSTLDITV LAQMDKDFSV SVLKDLVRNL RLALV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	128	ERKRRE
2	124	129	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g044510.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493559	0.0	AB493559.1 Arabidopsis thaliana At2g22760 mRNA for hypothetical protein, partial cds, clone: RAAt2g22760.
GenBank	DQ446550	0.0	DQ446550.1 Arabidopsis thaliana clone pENTR221-At2g22760 basic helix-loop-helix family protein (At2g22760) mRNA, complete cds.
GenBank	DQ653016	0.0	DQ653016.1 Arabidopsis thaliana clone 0000012971_0000009346 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472272.1	0.0	PREDICTED: transcription factor bHLH19-like isoform X1
Swissprot	Q1PF16	0.0	BH019_ARATH; Transcription factor bHLH19
TrEMBL	C0SV56	1e-178	C0SV56_ARATH; Uncharacterized protein At2g22760 (Fragment)
STRING	XP_010472272.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	1e-162	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]