PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1894
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 328aa    MW: 36985.8 Da    PI: 6.112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1894genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13152198455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Gh_A11G1894 152 DHVIAERKRREKLSQRFISLSALIPGL-----KKNDKASVLGDAIKYLKQLQ 198
                  6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-16153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.03E-12153201No hitNo description
SMARTSM003532.1E-13154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEIASAKWLS ELEMEDPMFF PQYPTMSPID FSFDDFNFES FSPESYTSYT NIDHSHGLHI  60
EASHNVGGDD FRRPMKQLKT TSSTWKSSCI TDNIPPKAAS SSSSHIISFD NSNSSQPDIS  120
QQYCGLDRDL KRKNEVSKRV GSSTRAPLYA QDHVIAERKR REKLSQRFIS LSALIPGLKK  180
NDKASVLGDA IKYLKQLQER VGTLENQVAT KTMESVIIVR KTQIYSDDET SSCGENFESQ  240
SNNPFPEIEA RVSEKDVLIR IHCEKNKGCI PNIINEVEKL HLCVLNTNVL PFGQGTLDIT  300
IVAQMEADFS MTVKDLVKSL RLALLNFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
2157162RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016746535.10.0PREDICTED: transcription factor bHLH19-like isoform X2
TrEMBLA0A1U8P5Z70.0A0A1U8P5Z7_GOSHI; transcription factor bHLH19-like isoform X2
STRINGGorai.007G229000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-67bHLH family protein