PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0530
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 302aa    MW: 34380.9 Da    PI: 7.0331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0530genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12124170455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+ri ++f  L  l+P +     kK +K ++L  A+eY+k+Lq
  Gh_D11G0530 124 EHVIAERKRRERISQSFLSLAALIPGL-----KKKDKNSVLGDAIEYLKQLQ 170
                  699***********************9.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.627120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-10124170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-11125171No hitNo description
SMARTSM003537.3E-12126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEDPTFFTQY ETTNPIEYPF DDFNFQSESY SSYPKINGSS INEASYHQLD VLERPPLKQL  60
KTNNWSSCIA PQKASFPSSS SHIISFNNSS SSLLYYGVDC DLKPKNEVPK MVGSLTRVPL  120
LAQEHVIAER KRRERISQSF LSLAALIPGL KKKDKNSVLG DAIEYLKQLQ ERKARLEEQV  180
AKRTVESVKF VKKTTQFYAQ DDQTSSSDEN FGTQSKNPFP DIEARVSNKD VLIRIHCETN  240
KGCISNIINE VEKLHLSVLN SNALPFRQAT LYITIVAQME DEFSMTLRDL VKTLREGLLS  300
FM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804138e-90JX580413.1 Gossypium hirsutum clone NBRI_GE12835 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694258.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1U8JZU30.0A0A1U8JZU3_GOSHI; transcription factor bHLH18-like
STRINGGorai.007G057800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-53bHLH family protein