PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000494m
Common NameEUTSA_v10000494mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 278aa    MW: 31593.2 Da    PI: 5.2868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000494mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10101147455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h  +Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  Thhalv10000494m 101 EHVLAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRMKQLQ 147
                      5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.35497146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-15101165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7101147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-15102162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-10102151No hitNo description
SMARTSM003531.3E-12103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDEDFCLADF SLEDIDFDFN FNEEISLLPD EASMHTQRIQ RSSDFDNQMR LGFLKEKPKP  60
AVNNKPQMIS FDFFSNVSSS PRGTKRKACS PATRSPVLAK EHVLAERKRR EKLSEKFIAL  120
SALLPGLKKA DKITVLDDAI SRMKQLQEQL RNLNEEKEAT REMESLILVK RSKVFLDEEP  180
YLSPSPSDHD QLDQALPEIE AKVSQNEVLI RIHCEKTKGC MFNILNTIEN LQLHIVNSVI  240
LPFGDSTLDI TVLAQIDKDF SVSVLKDLVR NLRLAMA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110ERKRRE
2106111RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000494m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404739.10.0transcription factor bHLH19
SwissprotQ1PF161e-146BH019_ARATH; Transcription factor bHLH19
TrEMBLV4LUM20.0V4LUM2_EUTSA; Uncharacterized protein
STRINGXP_006404739.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-148bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]