PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37582_BGI-A2_v1.0
Common NameF383_28381
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 312aa    MW: 35288.9 Da    PI: 6.5878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37582_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11135181455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  h  +Er+RR+++ ++f  L  l+P +     kK +Ka++L  A+ Y+k+Lq
  Cotton_A_37582_BGI-A2_v1.0 135 DHVLAERKRRAKLSQSFISLSALIPGL-----KKTDKASVLGDAITYLKKLQ 181
                                 58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-15135193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-12136184No hitNo description
PfamPF000105.5E-9136181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEIASGKWLS QLEMEDPTLF PQYQVINPID YSFHDINFHS ENYSTNPYYT IGNSFIEASH  60
EVDDFKRPMK QLKTNSWNSC ITENNIPPPP KPSSSSSSSH LISFDNSNSY YAVDYDVKPK  120
NEVGSFTRTP LHAQDHVLAE RKRRAKLSQS FISLSALIPG LKKTDKASVL GDAITYLKKL  180
QDRVNVLEEQ VAKKTMESGI FVRKTQIYAD DETSSSDESV HGQSNNPFPE IEARVSDKDV  240
LIRIHCKHNK GCISNIINEV EKLHLFVLNS HVLPFGQATL DITITAQMEA EFSMTAKDLV  300
KSLRLALLKF IM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721680.10.0PREDICTED: transcription factor bHLH19-like
TrEMBLA0A0B0PCU70.0A0A0B0PCU7_GOSAR; Transcription factor bHLH19-like protein
STRINGGorai.008G087600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-62bHLH family protein