PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481136
Common NameARALYDRAFT_481136
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 293aa    MW: 32433.2 Da    PI: 9.0627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481136genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12126172455
             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  481136 126 DHILAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAIKHIKYLQ 172
             5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10126172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17126185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17127186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-12127175No hitNo description
SMARTSM003533.2E-15128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNSLVGDVPQ SLSSLDDTTT CYNFDASYND DLVEEKPSKI LKTTLISPKL HPFSSSNPPP  60
PKDQPSSTII SFEKTGLNVM NHNSPNLIFS TKEEEIGLPN QKKTELIIRG TKRAQPLTRS  120
QSNAQDHILA ERKRREKLTQ RFVALSALVP GLKKMDKASV LGDAIKHIKY LQESVKEYEE  180
QKKEKTMVVV KKSQLVLDEN HQSSSSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM  240
GEIEKLGLSI TNSNVLPFGP AFDISIIAQN NNFDMKIDDV VKNLSCGLSK LT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13126182864Transcription factor MYC2
5gnj_B3e-13126182864Transcription factor MYC2
5gnj_E3e-13126182864Transcription factor MYC2
5gnj_F3e-13126182864Transcription factor MYC2
5gnj_G3e-13126182864Transcription factor MYC2
5gnj_I3e-13126182864Transcription factor MYC2
5gnj_M3e-13126182864Transcription factor MYC2
5gnj_N3e-13126182864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135ERKRRE
2131136RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap481136
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885620.0AF488562.1 Arabidopsis thaliana clone bHLH018 putative bHLH transcription factor mRNA, complete cds.
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883057.10.0transcription factor bHLH18
SwissprotQ1PF171e-162BH018_ARATH; Transcription factor bHLH18
TrEMBLD7LE330.0D7LE33_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.4__196__AT2G22750.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.11e-165bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]