PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4284_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 286aa    MW: 32528.8 Da    PI: 9.5294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4284_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13148195355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  RrC4284_p1 148 QEHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHIKYLQ 195
                 56999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-11148195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-16149204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.80E-13150198No hitNo description
SMARTSM003536.4E-15151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MATKMNVLST KWPSELDIEE YNIIHQYHMN SLIGDFPQSL SSLNDTTTCY NFGASCNDDL  60
VEDQKPSKIL KTTHESPNLP LYPFLNSTSP LPQSSSRILS FEKMGLKVMN HKSPNLIFIP  120
NEEVGSPDLI RRGTKRAQPL TRSPSNAQEH ILAERKRREK LTQRFVALSA LIPGLKKMDK  180
ASVLGDAIKH IKYLQESVNE NLIWFWMSII NYHLLSQMEI VTAQARIFQR SKLGFREKMF  240
LLKVICEKQK GHLIKIMCEI EKLGLSITNS SLLPFGPTSD ISIIAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158ERKRRE
2154159RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437993.11e-168PREDICTED: transcription factor bHLH18
SwissprotQ1PF171e-102BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A3P6GR781e-149A0A3P6GR78_BRAOL; Uncharacterized protein
STRINGBo8g100910.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.11e-105bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]