PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0459
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 302aa    MW: 34149.6 Da    PI: 6.2629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0459genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-12124170455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h  +Er+RR++i ++f  L  l+P +     kK +K ++L  A+eY+k+Lq
  Gh_A11G0459 124 EHVLAERKRREKISQSFLSLAALIPGL-----KKKDKNSVLGDAIEYLKQLQ 170
                  6899**********************9.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.653120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-16124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9124170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.47E-12125171No hitNo description
SMARTSM003534.2E-12126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEDPTFFTQY ETTNPIEYPF DDFNFQSESY SSYPKINGSS INEASHHQLD VLERPPLKQL  60
KTNNWSSCIA PPKASFSSSS SHIISFNNSS SSLLYYGVDC DLKPETEVSK MVGSLTRAPL  120
LAQEHVLAER KRREKISQSF LSLAALIPGL KKKDKNSVLG DAIEYLKQLQ ERKARLEEQV  180
AKRTVESVKF VKKTTQFYAQ DDQTSSSDEN FGTQSKNPFP DIEARVSNKD VLIRIHCETN  240
KGCISNIINE VEKLHLSVLN SNALPFGQAT LYITIVAQME DEFSMTLRDV VKTLREGLLN  300
FM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERKRRE
2129134RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804132e-87JX580413.1 Gossypium hirsutum clone NBRI_GE12835 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694258.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ1PF164e-53BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A2P5XX140.0A0A2P5XX14_GOSBA; Uncharacterized protein
STRINGGorai.007G057800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]