PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02398.1.p
Common NameEUGRSUZ_H02398
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 309aa    MW: 34538.3 Da    PI: 6.3716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02398.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.8e-12121166555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ ++f  L +++P +     +Kl+Ka++L  +++Y+k+L+
  Eucgr.H02398.1.p 121 HVIAERKRREKLSQRFIALSSIIPGL-----TKLDKASVLGDTIKYLKQLE 166
                       889**********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.66E-12121170No hitNo description
SuperFamilySSF474591.15E-15121180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10121166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-14122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
VTENPAFMDQ YQMNPFGYSP TESGFNQFTS FSSASTYMSN QIQNVGHSRD VPIATEHKNP  60
QMKPSPSSNS QIISFQNSDL YPNTSPQYPR TYELQDGENM KMKRSGDGGT FSRTTLHGPE  120
HVIAERKRRE KLSQRFIALS SIIPGLTKLD KASVLGDTIK YLKQLEERVK ILEEEVATRT  180
VESVIFAKKP SLQRGDGVIC FSSDGKSYDP LIEQQLPEVE AQVSGKNFLI KVQCEKHKGC  240
IKELMKQMED MNLTTLNISV LAFGSSLLDI IIMAQIENEN CLTLEEIVEK LRDALTMFLG  300
SSSKRSAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129ERKRRE
2125130RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02398.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023400.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A059B1U80.0A0A059B1U8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010023400.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-49bHLH family protein