PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1748
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 346aa    MW: 39015 Da    PI: 7.237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1748genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13177224355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Gh_D01G1748 177 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 224
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.069174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17177240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10177224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-13179228No hitNo description
SMARTSM003534.3E-15180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEISSMRELP EFVRLFSSYF LFLYVIDSFV LSTVCLQQMS NPQGIMEDPN LFHQWHMNSL  60
DELSFLPVTA AVDNYPDYSG AIGRPPKQLK TNCWGDSCNA SNLEASVFSP DALSFAASNH  120
VINPMGILKP KEEEAASSKS MEPFPSEILF SQNPFGTQNY VLKGCHGSKR LGISQTQDHI  180
MAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYL KQLQEKVKTL EEQTRKKSME  240
SVVFVKKSHL SAADNIDDFH QPLPEIEARF CDKSVLVRIH CEKRKGLPEK IMSELEKSHL  300
TVINSNTVTF GSSALDITIV AQMDIEFCMT VKDFVKKLRS AFESLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-15171227157Transcription factor MYC2
5gnj_B4e-15171227157Transcription factor MYC2
5gnj_E4e-15171227157Transcription factor MYC2
5gnj_F4e-15171227157Transcription factor MYC2
5gnj_G4e-15171227157Transcription factor MYC2
5gnj_I4e-15171227157Transcription factor MYC2
5gnj_M4e-15171227157Transcription factor MYC2
5gnj_N4e-15171227157Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
2183188RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622075.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1U8L2F70.0A0A1U8L2F7_GOSHI; transcription factor bHLH25-like
STRINGGorai.002G211500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-60bHLH family protein