PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593134.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 338aa    MW: 38355.8 Da    PI: 6.8008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12161207455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  XP_013593134.1 161 DHIMAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 207
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-17161220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10161207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-11162210No hitNo description
SuperFamilySSF474595.76E-17162225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-14163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNMFSTRWFS EQELEENSII QEYQINSRVG EIHEAQHDLP HSFSTLMAPT DDPSYDDLIE  60
MKPSKILKTT YIAPKLPPPP SFPLPPNSKT YLHHQPSSRI LSFENASPNG MDHGYAPTYL  120
NSIMNPKAED GEPPNRMNEP INRKGTKRAQ PLYRNQTNAQ DHIMAERKRR EKLTQRFVAL  180
SALVPGLKKM DKASVLGDAL KHIKYLQERV GELEEQKREK RLESVVLVNK SKLILDDNNQ  240
SSSSSCCEDG SSGLELPEIE VRFSDNDVLI KILCEKQKGH VAKIMAEIEK FNFSITNSSV  300
LPFGPTLDIT IIAKKENDFD MTLMDVVKSL RSALSKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13161217864Transcription factor MYC2
5gnj_B5e-13161217864Transcription factor MYC2
5gnj_E5e-13161217864Transcription factor MYC2
5gnj_F5e-13161217864Transcription factor MYC2
5gnj_G5e-13161217864Transcription factor MYC2
5gnj_I5e-13161217864Transcription factor MYC2
5gnj_M5e-13161217864Transcription factor MYC2
5gnj_N5e-13161217864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593134.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891830.0AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593134.10.0PREDICTED: transcription factor bHLH25
SwissprotQ9T0721e-178BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0D3A1580.0A0A0D3A158_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FTB70.0A0A3P6FTB7_BRAOL; Uncharacterized protein
STRINGBo1g003350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-149bHLH family protein