PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g044500.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 460aa MW: 51475 Da PI: 8.2791

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g044500.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	155	201	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK++Ka++L A+++Ik+Lq Csa16g044500.1 155 DHILAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAIKHIKYLQ 201 5899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.535	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-18	155	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-10	155	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-17	156	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.41E-12	156	205	No hit	No description
SMART	SM00353	3.4E-15	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.031	267	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-7	308	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-5	309	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MATTKNVFST RWTSELDIEE YSIIHQYHMN SLAGDVPQSF SSLDDTTTCF NFDASCNNDL 60 VEEIPSKILK TTHISPKIHP FPSSINTPPS KHQPSSRILS FEKTGLKVMD HNSPNLIFSP 120 KEEEIELQDQ RKSKLIIRGT KRAQTLTRSQ SNAQDHILAE RKRREKLTQR FVALSALVPG 180 LKKMDKASVL GDAIKHIKYL QEKVKEYEEQ KQERTMESMV LVKKSQLVLD ENHQSSSSSS 240 DGNRGCSSSN LPEIEVRVSG KDVLIKILCE KQKGNLIKIM GEIEKLGLLI TNSNVLPFGP 300 TFDISIIAQM DKASVLGDAI KHIKYLQEKV KEYEEQKQER TMESMVLVKK SQLVLDENHQ 360 SSSSSSDGNR GCSSSNLPEI EVRVSGKDVL IKILCEKQKG NLIKIMGEIE KLGLLITNSN 420 VLPFGPTFDI SIIAQKNSNF DMKIEDVVKN LSCGLSKLT*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MATTKNVFST RWTSELDIEE YSIIHQYHMN SLAGDVPQSF SSLDDTTTCF NFDASCNNDL  60
VEEIPSKILK TTHISPKIHP FPSSINTPPS KHQPSSRILS FEKTGLKVMD HNSPNLIFSP  120
KEEEIELQDQ RKSKLIIRGT KRAQTLTRSQ SNAQDHILAE RKRREKLTQR FVALSALVPG  180
LKKMDKASVL GDAIKHIKYL QEKVKEYEEQ KQERTMESMV LVKKSQLVLD ENHQSSSSSS  240
DGNRGCSSSN LPEIEVRVSG KDVLIKILCE KQKGNLIKIM GEIEKLGLLI TNSNVLPFGP  300
TFDISIIAQM DKASVLGDAI KHIKYLQEKV KEYEEQKQER TMESMVLVKK SQLVLDENHQ  360
SSSSSSDGNR GCSSSNLPEI EVRVSGKDVL IKILCEKQKG NLIKIMGEIE KLGLLITNSN  420
VLPFGPTFDI SIIAQKNSNF DMKIEDVVKN LSCGLSKLT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gnj_A	1e-13	155	211	8	64	Transcription factor MYC2
5gnj_B	1e-13	155	211	8	64	Transcription factor MYC2
5gnj_E	1e-13	155	211	8	64	Transcription factor MYC2
5gnj_F	1e-13	155	211	8	64	Transcription factor MYC2
5gnj_G	1e-13	155	211	8	64	Transcription factor MYC2
5gnj_I	1e-13	155	211	8	64	Transcription factor MYC2
5gnj_M	1e-13	155	211	8	64	Transcription factor MYC2
5gnj_N	1e-13	155	211	8	64	Transcription factor MYC2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	ERKRRE
2	160	165	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g044500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488562	0.0	AF488562.1 Arabidopsis thaliana clone bHLH018 putative bHLH transcription factor mRNA, complete cds.
GenBank	DQ446549	0.0	DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBank	DQ653015	0.0	DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472271.1	0.0	PREDICTED: transcription factor bHLH18
Swissprot	Q1PF17	1e-146	BH018_ARATH; Transcription factor bHLH18
TrEMBL	A0A3P6CFN3	1e-177	A0A3P6CFN3_BRACM; Uncharacterized protein
STRING	XP_010472271.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.1	1e-145	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]