PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1091
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 323aa    MW: 36807.6 Da    PI: 7.8462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1091genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13146193355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Gh_A04G1091 146 KDHIMAERKRREKLSEKFIALSALVPGL-----KKMDKATVLGDAIKYMKQLQ 193
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.85E-13141197No hitNo description
PROSITE profilePS5088816.183143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-19147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-17148210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEIPPIGELP EMVNLFFLIM ELLYAIKLKI SKSTQGLMEN PNIFNQWRID ELSVLPVPVP  60
VSASFGDNSQ HYEASSSRPA TIDRPQKQLK ITNGRNSCRT HILTDIQSSF SPHTLPFPSS  120
NYNPFGNQNF LVKGYHDTNN RISQSKDHIM AERKRREKLS EKFIALSALV PGLKKMDKAT  180
VLGDAIKYMK QLQEKVKTLE EQARQKSIES VVFVKKYQLL GDINDELSSW DEICAPFDEP  240
LPEIEARFCD QSVLISIHCE KRKGFPEKII SAIEKFNLTV INSNVMTFGS CAHITIVAQM  300
DMEFCMTVKE LVKNLRSSYI FLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6209201e-82JX620920.1 Gossypium hirsutum clone NBRI_GE67296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707360.10.0PREDICTED: transcription factor bHLH19-like
SwissprotQ9T0725e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1U8KY620.0A0A1U8KY62_GOSHI; transcription factor bHLH19-like
STRINGGorai.012G161900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-57bHLH family protein