PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006357t1
Common NameTCM_006357
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 413aa    MW: 46698.7 Da    PI: 8.9806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006357t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12235282355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Thecc1EG006357t1 235 KDHIMAERKRREKLSQSFIALSAIVPGL-----KKMDKASVLADAIKYLKQLQ 282
                       6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.745232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10235282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-17236293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16237295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-13237286No hitNo description
SMARTSM003531.4E-14238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSFHIIYPVR LVGWWTIKQA RALKVGRKLV LVPALQEDFF DIRKALDYHY RDSIQQAPSV  60
RKWDTSMEIS SIRELPELGM DDPNLFSQWQ MNSVDELSIL PLAAAFGENL QQSFSNHNYP  120
AFNPKTSVEP SHNGIDRPVK QHKTNSWDSC KPDTDISNLQ AAFSPNTFYF ASSNHMNPTG  180
IVKPKEEAAC SKSMESFPSD ILISQNSFLG SQNYMLKACH GAKRVSTGNK ISQSKDHIMA  240
ERKRREKLSQ SFIALSAIVP GLKKMDKASV LADAIKYLKQ LQEKVKTLEE QTRKKTIESV  300
VFVKKSQLFA DSDDFSSDQN FSGPFDEPLP EIEARFCDKS VLIRIHCEKR KGLPEKIMSQ  360
IEKCHLTVIN SNVMTFGSSA LDITIVAQMD MEFCMAVKDL VKKLRSAFKL IM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245ERKRRE
2241246RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970242.10.0PREDICTED: transcription factor bHLH18
TrEMBLA0A061DWW00.0A0A061DWW0_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOX972890.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-57bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]