PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

481137

Common Name

ARALYDRAFT_481137

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 286aa MW: 32664.5 Da PI: 5.7333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
481137	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	109	155	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L llP + kK +K++iL A+ +k+Lq 481137 109 EHVLAERNRREKLSQKFIALSALLPGL-----KKADKVTILDDAISRMKQLQ 155 5899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.246	105	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-15	109	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-8	109	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-15	110	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.45E-10	110	159	No hit	No description
SMART	SM00353	2.9E-13	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDEDFFLTDF SLEDIDFDFN IYEEKNLSPD ESADQSSKFD HQMHLEFLRE QPKPVVKINN 60 KQQLISFDFS SNVSSSPATE EIIMDKLVGR GTKRKTCFHG TRSPVLAKEH VLAERNRREK 120 LSQKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRK LKEEKEATRE IQSRILVKKS 180 KLLFDAEPNL SSSTLDHDQF DQALPEIDAK ISQNDILIRI HCEKSKGCMI NILKTVENLQ 240 LRIENSIVLP FGDSTLDITV LAQMDKDFSV SVLKDLVRDL RLAMV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	481137

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446550	0.0	DQ446550.1 Arabidopsis thaliana clone pENTR221-At2g22760 basic helix-loop-helix family protein (At2g22760) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882825.1	0.0	transcription factor bHLH19
Swissprot	Q1PF16	1e-175	BH019_ARATH; Transcription factor bHLH19
TrEMBL	D7LE34	0.0	D7LE34_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.4__197__AT2G22760.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	1e-157	bHLH family protein

Link Out ? help Back to Top
Phytozome	481137
Entrez Gene	9314699

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]