PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676765826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 38441.8 Da PI: 7.0733 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.2e-12 | 161 | 207 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK++Ka++L A ++Ik+Lq 676765826 161 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 207 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.932 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-16 | 161 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-16 | 161 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-10 | 161 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.30E-11 | 162 | 210 | No hit | No description |
SMART | SM00353 | 7.7E-14 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MNMFSTRWFS EQELEDNNII QQYHMNSIVG EIHEAPLTLP HSFSTLMTTT NDPSYDDLME 60 TKPSKILKTT YISPKLPPPT SFPLPPNSKH HLPHQPSSRI LSFENASPNV MDHEYSPTYV 120 NSIFNPNVED EVPPNRLNEP TNRKGTKRAQ PLYRSQSTAQ DHIIAERKRR EKLTQRFVAL 180 SALVPGLKKM DKASVLGDAL KHIKYLQERV GEFEEQKRER RLESMVLVKK SKLILDDNNQ 240 SSSSSCCEDG SSGSDLPEIE VRFSDKDVLI KILCEKQKGH VAKIMAEIEK FDFSITNSSV 300 LPFGPTLDIT ITAKKESDFD MTLMDVVKSL RSALSKFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 170 | ERKRRE |
2 | 166 | 171 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676765826 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488567 | 0.0 | AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469673.1 | 0.0 | PREDICTED: transcription factor bHLH25 | ||||
Swissprot | Q9T072 | 0.0 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1J3CWY6 | 0.0 | A0A1J3CWY6_NOCCA; Transcription factor bHLH25 | ||||
TrEMBL | A0A3P5ZBZ9 | 0.0 | A0A3P5ZBZ9_BRACM; Uncharacterized protein | ||||
STRING | Bra011790.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-170 | bHLH family protein |