PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531586.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 306aa    MW: 34922.8 Da    PI: 5.7587
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10131177455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  l+P +     kK +Ka++L  A+ ++k+Lq
  XP_010531586.1 131 EHVLAERKRREKLSERFIALSALIPGL-----KKADKATVLGNAITHLKELQ 177
                     5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.545127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-10132181No hitNo description
SuperFamilySSF474591.7E-15132192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-13133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDDFFLPEFT FEDIDFDFSM DEEILSSDRE TAHKPQISYD HCDNDQTQGF LCERSSVKQM  60
KNSSRNSCSS STTKPCFPYN FPSELFSFEF SNLSPQTTEN TNIDIRSPRL GQGTKRKGCT  120
PGARSPVLAK EHVLAERKRR EKLSERFIAL SALIPGLKKA DKATVLGNAI THLKELQERI  180
RDLEQEKEAS RETETMIVVK KSRILVEDET RGSSFSSLGE NLDQELPEIE ANMSRDDVLI  240
RLHCEKNKGC IVRILNEIER LHLRVMNSTV LPFGDFTLDI TVLAKKEKDF CMTVKDLVKS  300
LKLAML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERKRRE
2136141RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531586.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531586.10.0PREDICTED: transcription factor bHLH19
SwissprotQ1PF164e-94BH019_ARATH; Transcription factor bHLH19
TrEMBLC0SV569e-92C0SV56_ARATH; Uncharacterized protein At2g22760 (Fragment)
STRINGXP_010531586.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]