PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g052850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 382aa    MW: 43484.7 Da    PI: 6.4493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g052850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10120166455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  Csa07g052850.1 120 EHVLAERKRREKLSEKFIALSALLPGL-----KKADKVTVLDDAISRMKQLQ 166
                     5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7120166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.59E-10121170No hitNo description
SMARTSM003532.7E-13122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEDFRLADF SLENIDFDFN IYEENINLSA NEADMDSRQA HRSSHFDHQM HLEFLGQKPK  60
SAVKPMMKIN NKPRVISFDF SSNVSSSPAV EEIIMDQLVG RGTKRKTCSH GTRSPVLAKE  120
HVLAERKRRE KLSEKFIALS ALLPGLKKAD KVTVLDDAIS RMKQLQEQLR KLKEEKEATR  180
EMESIILVKK SKVLYDDEPN LSSSPSYHNQ FDQALPEIEA KVSQNDVLIR IHCEKSKGRM  240
INILNTIENL QLRIENSIVL PFGDSTLDIT VLAQKSKVLY DDEPNLSSSP SYHNQFDQAL  300
PEIEAKVSQN DVLIRIHCEK SKGRMINILN TIENFQLRIE NSIVLPFGDS TLDITVLAQM  360
DKDFSVSVLK DLVRNHRLAL V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129ERKRRE
2125130RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g052850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417033.10.0PREDICTED: transcription factor bHLH19-like
SwissprotQ1PF161e-163BH019_ARATH; Transcription factor bHLH19
TrEMBLC0SV561e-161C0SV56_ARATH; Uncharacterized protein At2g22760 (Fragment)
STRINGXP_010417033.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-144bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]