PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007368001
Common NameGSBRNA2T00007368001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 286aa    MW: 32730.5 Da    PI: 6.531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007368001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10112158455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ ++f  L  llP +     +K +K+++L  A+  +k+Lq
  GSBRNA2T00007368001 112 EHVIAERKRREKLSEKFIALSALLPGL-----TKADKITVLDDAISRLKQLQ 158
                          699***********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.297108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15111174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15112173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-8112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-10113162No hitNo description
SMARTSM003539.5E-13114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.10007.0E-4206274IPR023214HAD-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDEDFFLTDF SPEDIDFDFN IYEETNVSPV EASIHTERAQ FIEHQVPLNY LNEKPKPVVK  60
INNKPRVIFF YFSSNVSSSP AREDIIMDQL ARRGTKRKSC SPAKRSPVFA KEHVIAERKR  120
REKLSEKFIA LSALLPGLTK ADKITVLDDA ISRLKQLQEQ IRKLKEEKEA TRHMESMILV  180
KKSKVFFDEG TFLSSSSSSD HEQFGQPLPE IEAKVSQNEV LIRIHCEKSK GSMIDILNTI  240
ENFQLRYVLP FGDSILDITI LAQMGKDFSV NALEDFVRNL RLAMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197RRGTKRK
2116121ERKRRE
3117122RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007368001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710501.10.0transcription factor bHLH19-like
RefseqXP_013711069.10.0transcription factor bHLH19-like
SwissprotQ1PF161e-139BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A078IUB30.0A0A078IUB3_BRANA; BnaC08g49180D protein
STRINGBra039926.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-130bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]