PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G0736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 35331 Da PI: 6.5878 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2e-11 | 135 | 181 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK +Ka++L A+ Y+k+Lq Gh_A12G0736 135 DHVLAERKRRAKLSQSFISLSALIPGL-----KKTDKASVLGDAITYLKKLQ 181 58899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.488 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-15 | 135 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-15 | 136 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.76E-12 | 136 | 184 | No hit | No description |
Pfam | PF00010 | 5.5E-9 | 136 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-12 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEIASGKWLS QLEMEDPTLF PQYQVINPID YSFHDVNFHS ENYSTNPYYT IGNSFIEASH 60 EVDDFKRPMK QLKTNSWNSC ITENNIPPPP KPSSSSSSSH LISFDNSNSY YAIDYDVKPK 120 NEVGSFTRTP LHAQDHVLAE RKRRAKLSQS FISLSALIPG LKKTDKASVL GDAITYLKKL 180 QDRVNVLEEQ VAKKTMESVI FVRKTQIYAD DETSSSDESV HGQSNNPFPE IEARVSDKDV 240 LIRIHCKHNK GCISNIINEV EKLHLFVLNS HVLPFGQATL DITITAQMEA EFSMTAKDLV 300 KSLRLALLKF IM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016721680.1 | 0.0 | PREDICTED: transcription factor bHLH19-like | ||||
TrEMBL | A0A1U8M4G1 | 0.0 | A0A1U8M4G1_GOSHI; transcription factor bHLH19-like | ||||
STRING | Gorai.008G087600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 6e-63 | bHLH family protein |