PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000895t1
Common NameTCM_000895
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 363aa    MW: 40281.4 Da    PI: 7.2834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000895t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12185231455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Thecc1EG000895t1 185 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 231
                       699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.383181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10185231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-17185244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-17185243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.52E-13186235No hitNo description
SMARTSM003532.0E-14187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDSSSAKWLS ELGMDEYNII HQCHMNSLAE LTTAEDIATA LTAGNFKQSF SSESYSSYPN  60
FNTKNATTFS GSSIETCERP TKQIKTSTSW NSSTTTEHIP QKPSSPTSQI LSFEKSTSLP  120
ANSQQFYNID HHAMKPKDET VSSGNMNFSP VITNGPYGNT NYAPKPNPGI KRTYSMTRSP  180
SHAQDHIMAE RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAIKYVKQL QERLKVLEEQ  240
TKKRTVESVV FVKKSQLSAD DETSSCEENS DSQSSDAALP EIEARVSDND VLIRIHCEKQ  300
KGFVVKILSE IENLHLTVVN SSVLPFGNST LDITIIAQKD AEFSMTVKDL VKDLRVAFLK  360
FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13185248869Transcription factor MYC2
5gnj_B5e-13185248869Transcription factor MYC2
5gnj_E5e-13185248869Transcription factor MYC2
5gnj_F5e-13185248869Transcription factor MYC2
5gnj_G5e-13185248869Transcription factor MYC2
5gnj_I5e-13185248869Transcription factor MYC2
5gnj_M5e-13185248869Transcription factor MYC2
5gnj_N5e-13185248869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047665.20.0PREDICTED: transcription factor bHLH18
RefseqXP_017969563.10.0PREDICTED: transcription factor bHLH18
TrEMBLA0A061DHY30.0A0A061DHY3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOX918220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-74bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]