PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC28165_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 296aa MW: 33960.1 Da PI: 7.2229 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.2e-10 | 119 | 165 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L llP + kK +K+++L A+ +k+Lq RrC28165_p1 119 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRVKQLQ 165 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.297 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-15 | 119 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-7 | 119 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.09E-14 | 120 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.14E-9 | 120 | 169 | No hit | No description |
SMART | SM00353 | 1.9E-12 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDADFFLTDF SLENIDFDFN TYEEMNVTPV EASMHTQRAQ FSSNFHHQMH LDFLKGKPNP 60 VEKEMMKINN KPRVISFDFS SNVSSSTAEE DIIMDRLANY GSKRKACSST TRSPVLAKEH 120 VIAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQERVRK LKEEKEARRE 180 MESMILVKKS KVFIDQEPHQ SSSCSSYHEK FDQLLPEIEA KVVQKEVLIR IHCEKSKGCM 240 INILNTIENL QLRIENSIVL PFGDSTLDIT VLAQMGKDFS VCALEDLVRN LRLSMA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | ERKRRE |
2 | 124 | 129 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480745.1 | 0.0 | PREDICTED: transcription factor bHLH19 | ||||
Swissprot | Q1PF16 | 1e-151 | BH019_ARATH; Transcription factor bHLH19 | ||||
TrEMBL | A0A0D3C1B0 | 1e-179 | A0A0D3C1B0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CWC0 | 1e-179 | A0A3P6CWC0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CXT0 | 1e-179 | A0A3P6CXT0_BRACM; Uncharacterized protein | ||||
STRING | Bo4g151000.1 | 1e-180 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 1e-133 | bHLH family protein |
Publications ? help Back to Top | |||
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