PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA123G00123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26687.5 Da PI: 9.4022 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.3 | 1e-11 | 73 | 119 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +ErrRR+++ ++f L +l+P + K +Ka++L +++Y+k+L+ AA123G00123 73 DHILAERRRREKLSQRFLALSTLVPGL-----NKRDKASVLGGTIKYLKHLE 119 6999**********************8.....5*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-16 | 69 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.428 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 73 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 73 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.48E-12 | 74 | 123 | No hit | No description |
SMART | SM00353 | 8.4E-13 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MQQWQMMMNS STIEELNNNI ISFSSPLLVP HQFETQHSPQ VTTLDSTKPR SYLNQYSNGV 60 QEVMPRGASQ AKDHILAERR RREKLSQRFL ALSTLVPGLN KRDKASVLGG TIKYLKHLEE 120 RVKFLEEQAS QRTIESVVFV NKSTLSTDTD SWSDSITALP EIEVKFSGLN VLIRIHCEKK 180 KGVMETTLAE IENLKLNVIN NSLFTFGSNS IHLTVISQIM VFQTLNYFRE KSPN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 82 | ERRRRE |
2 | 78 | 83 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA123G00123 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489839.1 | 5e-83 | PREDICTED: transcription factor bHLH25-like isoform X1 | ||||
Swissprot | Q9T072 | 1e-44 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A3P6BEX6 | 5e-80 | A0A3P6BEX6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g088300.1 | 2e-79 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-43 | bHLH family protein |