PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720270
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 325aa    MW: 36449.5 Da    PI: 8.2115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720270genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13150196455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  676720270 150 DHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHIKHLQ 196
                5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.478146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10150196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16150208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-16150212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.80E-13151200No hitNo description
SMARTSM003531.0E-14152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MATTMNVFST KWSSELDVEE YSIIHQYHMN SLLGDFPQSR SYLDDTTTCY KYDASCNDDL  60
VDEEKPSKML KTTRESPKLY PCPSSNPTPP PHPQPSSRIL SFEKTGSKFM NHNSPNLIFS  120
PKEEVGSPDL INRGKKRAQP LTRSPSNAQD HILAERKRRE KLTQRFVALS ALIPGLKKMD  180
KASVLGDAIK HIKHLQESVK GYEEHKKERT LESIVLVKKS QLVLDDNNQL SSSSSDGNRD  240
CPSSNLPEIE VRVSGKDVLI KILCEKQKGH LIKTMAEIEK LGLSITNSSV LPFGPTFDIS  300
IIAQKTSDFD MKVEDVVKTL SYGLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159ERKRRE
2155160RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746950.10.0transcription factor bHLH18-like isoform X1
SwissprotQ1PF171e-139BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A3P6CFN30.0A0A3P6CFN3_BRACM; Uncharacterized protein
STRINGBra030210.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-133bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]