PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g35490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 335aa    MW: 38213.8 Da    PI: 7.4161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g35490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12158204455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  Tp7g35490 158 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 204
                699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16158218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-10158204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-10159207No hitNo description
SuperFamilySSF474592.22E-16159223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-14160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDMLSTRWFS EQEIEENSII QQYHMNSIMG EIHDVQHTLP HSFSTLMTTT NDSSYDDLIE  60
MKPSKILKTT YISPKLPPPL FPPNVKPHLH HQPSSRILSF ENASPNVTDH EYSPTYLNSI  120
FNPKAEDEVP PNQINEPINR KGTKRAQPLY RSQSNAQDHI IAERKRREKL TQRFVALSAL  180
VPGLKKMDKA SVLGDALKHI KYLQERVGEF EEQKRERRLE SMVLVKKSKL ILDDNNQSSS  240
SSCCEEGSSG LDLPQIEVRF SDKDVLIKIL CEKQKGHIAK IIAEIEKFHL SITNSSVLPF  300
GPTLDITIIA KKESDFDMTL MDVVKSLRSG LSKFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERKRRE
2163168RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g35490
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469673.10.0PREDICTED: transcription factor bHLH25
SwissprotQ9T0720.0BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1J3CWY60.0A0A1J3CWY6_NOCCA; Transcription factor bHLH25
STRINGBra011790.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-164bHLH family protein