PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024768m
Common NameCARUB_v10024768mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 306aa    MW: 34953.1 Da    PI: 6.4319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024768mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10124170455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h  +Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  Carubv10024768m 124 EHVLAERKRREKLSEKFIALSALLPGL-----KKADKVTVLDDAISRMKQLQ 170
                      5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-15124185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15124188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7124170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-9125174No hitNo description
SMARTSM003536.5E-13126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGDFITLPD FSLEDIDFDF NIYEADDMIM DSQRAQERSS SHFDHHQMHL EFLREKLPKS  60
ADVKPMMKII NNNNVPRLIS FDFSSNVSSS PAHVDEIFRD KLVERGTKRK TCSHGTRSPV  120
LAKEHVLAER KRREKLSEKF IALSALLPGL KKADKVTVLD DAISRMKQLQ EQIRKLKEEK  180
EAKREMESMI LVKRSKVLFD EETDLSSSCP SDNYHNQLFN QALPEIEAKI SQNDVLIRIH  240
CEKSKGCMIN ILNTIENLQL RIENSIVLPF GDSTLDITVL AQMDKDGSVS VVKDLVRNLR  300
VALVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERKRRE
2129134RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024768m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295655.10.0transcription factor bHLH19
SwissprotQ1PF161e-152BH019_ARATH; Transcription factor bHLH19
TrEMBLR0HWW40.0R0HWW4_9BRAS; Uncharacterized protein
STRINGXP_006295655.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-137bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]