PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027504m
Common NameCICLE_v10027504mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 350aa    MW: 39027.7 Da    PI: 6.8412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027504mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13169215455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++N++f  L  l+P +     kK +Ka+iL   ++Y+k+Lq
  Ciclev10027504m 169 DHVIAERKRREKLNQRFIALSALVPGL-----KKTDKASILGDSIKYLKQLQ 215
                      5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.986165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-17169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-18169227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-11170215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-13170219No hitNo description
SMARTSM003531.8E-15171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEDSSIFNQY QTNSPFDCLV DGLSFQSFPS HEGYYPTKNS VHEPDSTSGS YSEASDQYQY  60
HHHAVEHGLE RPAKQLKTNS WNSSCTTELV YITPSPKASP SSSQIISFEN SMTSSPAPTV  120
AGSSFHGNIN SSSSLISQGS YLDQFCSKKK VQEPRRVSSV IRDPSHAKDH VIAERKRREK  180
LNQRFIALSA LVPGLKKTDK ASILGDSIKY LKQLQERVKA LEEQTSKKTV ESMIIVKKSQ  240
MIYTDDETSP TDINFDAQSN QYLPEIEVRV SDRDVLIRIH CEKNNNKGHL ANILSEIENV  300
HHLSVLSCNV LPFGNSTVDI TVAAQMDVES DVTVKDLVKN LQPALRKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13169224863Transcription factor MYC2
5gnj_B8e-13169224863Transcription factor MYC2
5gnj_E8e-13169224863Transcription factor MYC2
5gnj_F8e-13169224863Transcription factor MYC2
5gnj_G8e-13169224863Transcription factor MYC2
5gnj_I8e-13169224863Transcription factor MYC2
5gnj_M8e-13169224863Transcription factor MYC2
5gnj_N8e-13169224863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERKRRE
2174179RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426180.20.0transcription factor bHLH25
TrEMBLV4SKN60.0V4SKN6_9ROSI; Uncharacterized protein
STRINGXP_006426180.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-63bHLH family protein