PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720272
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 296aa    MW: 34188.3 Da    PI: 6.6432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720272genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10119165455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  676720272 119 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRVKQLQ 165
                699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.399115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15119180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.59E-10120169No hitNo description
SuperFamilySSF474596.28E-15120179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDEDFFLTDF SLEDIDFDFN IFEEINVSPA EASMHTQRAQ FSSNFNHHVP LDFHKEKPKP  60
VVKEMRKINK KPRVISFDFS SNVTSSPVTE DIIIDRLVRC GTKRKAYSPA TRSPMLAKEH  120
VIAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQEQLRK FQEEKEATRD  180
MESMVLVKKS KVFFDEEPYL SSPSSSDHEN FDQLLPEIEA KVSQNEVLIR IHCEKSKWSM  240
INILNTIENL QLRIQNSIVL PFGDSTLDIT VLAQMEKDFS VSTLKDLVRN LRLAML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128ERKRRE
2124129RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720272
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480745.11e-173PREDICTED: transcription factor bHLH19
SwissprotQ1PF161e-152BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A3P6CXT01e-168A0A3P6CXT0_BRACM; Uncharacterized protein
STRINGBra030208.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-155bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]