PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8195_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 256aa    MW: 28749 Da    PI: 9.6654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8195_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13102148455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  RrC8195_p1 102 DHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHIKYLQ 148
                 5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4498147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17102167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17102163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10102148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-12103151No hitNo description
SMARTSM003533.2E-15104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTNCYNFDAS CDDDMVEEKP SKILKTTHAS QKLHPYTSYN PPQQSQPSSR ILSFEKTGLK  60
VVNHNSSNIT FSPKQEVGSP DLITRGTKRA QPLTRSHSNA QDHILAERKR REKLTQRFVA  120
LSALIPGLKK MDKASVLGDA IKHIKYLQES VKEYEEQKKE KTMKSMVLVK KSQLVLDENH  180
QLSSSSSEGN RDCSSLNLPE MEFKVSGKDV LIKILCEKQK SNLIKIMAEI EKLGLSITNS  240
SVLPFGPTFD ISIIAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13102158864Transcription factor MYC2
5gnj_B2e-13102158864Transcription factor MYC2
5gnj_E2e-13102158864Transcription factor MYC2
5gnj_F2e-13102158864Transcription factor MYC2
5gnj_G2e-13102158864Transcription factor MYC2
5gnj_I2e-13102158864Transcription factor MYC2
5gnj_M2e-13102158864Transcription factor MYC2
5gnj_N2e-13102158864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111ERKRRE
2107112RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688347.11e-171transcription factor bHLH18-like
SwissprotQ1PF171e-121BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A0D3C1A61e-167A0A0D3C1A6_BRAOL; Uncharacterized protein
STRINGBo4g150960.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.11e-119bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]