PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G2074 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 37238.2 Da PI: 6.3176 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.7e-13 | 153 | 199 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Gh_D11G2074 153 DHVIAERKRREKLSQRFISLSALIPGL-----KKNDKASVLGDAIKYLKQLQ 199 6999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.983 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-10 | 153 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-15 | 153 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-16 | 154 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-11 | 154 | 202 | No hit | No description |
SMART | SM00353 | 2.1E-13 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEIASAKWLS ELEMEDPTLF PQYPTMNPID FSFDDFNFES FSPESYTSYT NIDHSHGLHI 60 EASHNVGDDD FRRPMKQLKT SSSTWKSSCI TDNIPPKAAS SSSSHIISFD NSNSSPPDIS 120 QQYCGLDRDL KRKMRWVSKR VGSSTRAPLY AQDHVIAERK RREKLSQRFI SLSALIPGLK 180 KNDKASVLGD AIKYLKQLQE RVGTLENQVA TKTMESVIIV RKTQIYSDDE TSSCGENFES 240 QSNNPFPEIE ARVSEKDMLI RIHCEKNKGC IPNIINEVEK LHLCVLNTNV LPFGQATLDI 300 TIVAQMEADF SMTVKDLVKS LRLALLNFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 162 | ERKRRE |
2 | 158 | 163 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492041.1 | 0.0 | PREDICTED: transcription factor bHLH19-like isoform X2 | ||||
TrEMBL | A0A2P5SNU3 | 0.0 | A0A2P5SNU3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G229000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-66 | bHLH family protein |