PlantRegMap/PlantTFDB v5.0
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Factor Database
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Phylogenetic Tree for OGEM323
Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 216: /---------- XP_013635013.1 [Brassica oleracea] (3) | | /----- XP_009142416.1 [Brassica rapa] (32) /-100+-100+ | | \----- GSBRNA2T00053358001 [Brassica napus] (98) | | | \---------- GSBRNA2T00037260001 [Brassica napus] (84) /-77-+ | | /----- XP_013635105.1 [Brassica oleracea] (31) | | | | | |----- GSBRNA2T00074062001 [Brassica napus] (57) | \---100---+ /-64-+ |----- GSBRNA2T00132894001 [Brassica napus] (69) | | | | | \----- XP_009142648.1 [Brassica rapa] (119) | | /-100+ \-------------------- KFK37407.1 [Arabis alpina] (34) | | | | /----- GSBRNA2T00138929001 [Brassica napus] (56) | \---------68--------+ /--53-+ \----- GSBRNA2T00101593001 [Brassica napus] (115) | | | | /----- XP_009133779.1 [Brassica rapa] (93) /-58-+ \-----------69-----------+ | | \----- XP_013627412.1 [Brassica oleracea] (131) | | | \------------------------------------ Rsa1.0_02653.1_g00003.1 [Raphanus sativus] (171) /-78-+ | |----------------------------------------- 676734698 [Sisymbrium irio] (8) | | /-54-+ \----------------------------------------- Rsa1.0_00201.1_g00031.1 [Raphanus sativus] (38) | | /-53-+ \---------------------------------------------- RrC1008_p3 [Raphanus raphanistrum] (52) | | | \--------------------------------------------------- Tp4g28430 [Thellungiella parvula] (77) | | /---------- Bostr.25993s0128.1.p [Boechera stricta] (6) | | /-89-+ |---------- Cagra.0050s0058.1.p [Capsella grandiflora] (14) | | | | | | /----- Csa06g052900.1 [Camelina sativa] (41) | | | | | | |-81-+----- Csa05g002790.1 [Camelina sativa] (78) | | | | | \----------------------57---------------------+ \----- Csa04g065460.1 [Camelina sativa] (165) | | --58-+ |---------- AT2G46410.1 [Arabidopsis thaliana] (66) | | | |---------- Thhalv10001695m [Eutrema salsugineum] (121) | | | |---------- Araha.40568s0001.1.p [Arabidopsis halleri] (126) | | | \---------- Carubv10024406m [Capsella rubella] (177) | \------------------------------------------------------------- XP_010559129.1 [Tarenaya hassleriana] (147) Subtree rooted at node 283: /-------------------------------------------------------- Thecc1EG015351t1 [Theobroma cacao] (4) | | /---------------------------------------------- XP_009119863.1 [Brassica rapa] (9) | | | | /----- XP_013609347.1 [Brassica oleracea] (11) | | | | |-------------------95-------------------+----- GSBRNA2T00009407001 [Brassica napus] (42) | | | | | \----- GSBRNA2T00009408001 [Brassica napus] (133) | | | | /--------------- AT5G53200.1 [Arabidopsis thaliana] (17) | | | | | | /----- Csa11g085060.1 [Camelina sativa] (25) | | | /-99-+ | | | | \----- Csa18g024230.1 [Camelina sativa] (29) | | |-99-+ | |--------------85--------------+ \---------- Csa02g049550.1 [Camelina sativa] (163) | | | | | |--------------- 357563 [Arabidopsis lyrata] (50) | | | | | |--------------- Bostr.26833s0960.1.p [Boechera stricta] (117) | | | | | \--------------- Araha.24710s0001.1.p [Arabidopsis halleri] (180) | | | | /--------------- Carubv10024964m [Capsella rubella] (27) | | | | | | /----- 481955 [Arabidopsis lyrata] (65) | | /------87------+ /-99-+ | | | | | \----- Araha.4880s0001.1.p [Arabidopsis halleri] (145) | | | \-51-+ | | | \---------- AT2G30432.1 [Arabidopsis thaliana] (76) | | | | | | /-------------------- Csa16g014450.1 [Camelina sativa] (79) | | | | | | | | /----- Cagra.0567s0009.1.p [Capsella grandiflora] (80) | | | |------100-----+ | | | | \----- Carubv10025583m [Capsella rubella] (88) | | | | | | /--64-+ | /---------- AT2G30420.1 [Arabidopsis thaliana] (82) | | | | /-93-+ | | | | | | | /-93-+ /----- 902029 [Arabidopsis lyrata] (113) | | | | | | | \-100+ | | | | | |-76-+ \----- 856498 [Arabidopsis lyrata] (181) | | | | | | | | | | | | | \--------------- Bostr.24513s0196.1.p [Boechera stricta] (190) | | | | | | | | | | | \-------------------- Csa05g033290.1 [Camelina sativa] (127) | | | | | | | | \-70-+ /----- GSBRNA2T00024517001 [Brassica napus] (83) | | | | /-100+ | | | | | \----- XP_013626295.1 [Brassica oleracea] (148) | | /-91-+ | /-78-+ | | | | | | | /----- GSBRNA2T00142148001 [Brassica napus] (86) | | | | | | \-100+ | | | | | /-100+ \----- XP_009132732.1 [Brassica rapa] (120) | | | | | | | | | | | \-89-+ \--------------- RrC3941_p2 [Raphanus raphanistrum] (184) | | | | | | /-57-+ | | \-------------------- Thhalv10017480m [Eutrema salsugineum] (190) | | | | | | | | | | /---------- KFK22006.1 [Arabis alpina] (60) | | | | | | | | | | | | /----- Carubv10024393m [Capsella rubella] (125) | | | | | |-66-+ | | | | \------------57-----------+ \----- Bostr.24513s0195.1.p [Boechera stricta] (183) | | | | | | | |-78-+ | /----- 902030 [Arabidopsis lyrata] (156) | | | | \-100+ | | | | \----- AT2G30424.1 [Arabidopsis thaliana] (167) | | | | | | | | /----- GSBRNA2T00028222001 [Brassica napus] (48) | | | | | | | | | /-87-+----- XP_013587526.1 [Brassica oleracea] (68) | | | | | | | | | | | \----- GSBRNA2T00028218001 [Brassica napus] (110) | | | | /-95-+ | | | | | |---------- XP_009144060.1 [Brassica rapa] (170) | | | | | | | | | | /-86-+ \---------- GSBRNA2T00149404001 [Brassica napus] (168) | | | | | | | | | | | \--------------- Rsa1.0_01460.1_g00004.1 [Raphanus sativus] (71) | | | \---------100--------+ | | | | /----- GSBRNA2T00078846001 [Brassica napus] (92) | | | \------100-----+ | | | \----- XP_009109119.1 [Brassica rapa] (95) | | | | | | /----- XP_009127186.1 [Brassica rapa] (33) |-75-+ | | | | |-------------------100------------------+----- RrC7880_p1 [Raphanus raphanistrum] (134) | | | | | | | \----- XP_013619584.1 [Brassica oleracea] (170) | | | | | | /--------------- Tp6g15380 [Thellungiella parvula] (35) | | | | /-70-+ | | | /---------- GSBRNA2T00024989001 [Brassica napus] (40) | | | | | | | | | | | | /----- GSBRNA2T00086671001 [Brassica napus] (137) | | | | | |-99-+ | | | | /-64-+-97-+ \----- XP_009132494.1 [Brassica rapa] (172) | | | | | | | | | | | | | | /----- XP_013626756.1 [Brassica oleracea] (142) | | | | | | \-69-+ | | | |------------54-----------+ | \----- GSBRNA2T00066516001 [Brassica napus] (162) | | | | | | | | | | | \--------------- RrC23313_p1 [Raphanus raphanistrum] (149) | | | | | | | | | \-------------------- Thhalv10015741m [Eutrema salsugineum] (175) | | | | | | | | /----- Cagra.0084s0067.1.p [Capsella grandiflora] (70) | | | |-------------------100------------------+ | | | | \----- Carubv10027412m [Capsella rubella] (189) | | | | | | | |---------------------------------------------- 676757634 [Sisymbrium irio] (91) | | | | | | | \---------------------------------------------- KFK26937.1 [Arabis alpina] (122) | | | | | \--------------------------------------------------- AA77G00034 [Aethionema arabicum] (161) | | | | /----- XP_010537120.1 [Tarenaya hassleriana] (13) | | | | |------------------------59------------------------+----- XP_010555717.1 [Tarenaya hassleriana] (36) | | | | | \----- XP_010521380.1 [Tarenaya hassleriana] (64) | | | | /----- Gh_A06G1771 [Gossypium hirsutum] (24) | | /-99-+ | | | \----- Cotton_A_04954_BGI-A2_v1.0 [Gossypium arboreum] (188) | | /-100+ | | | | /----- Gh_D06G2207 [Gossypium hirsutum] (43) | | | \-100+ | | /-74-+ \----- Gorai.010G252300.1 [Gossypium raimondii] (130) | | | | | | | \--------------- Thecc1EG030224t1 [Theobroma cacao] (141) | | /-70-+ | | | | /----- Eucgr.D01323.1.p [Eucalyptus grandis] (144) | | | \------100-----+ | | | \----- EcC016308.10 [Eucalyptus camaldulensis] (173) | | | | | |------------------------- Neem_38154_f_1 [Azadirachta indica] (90) | | | | | | /----- Gh_D12G1561 [Gossypium hirsutum] (99) | | | /-100+ | | | | \----- Gorai.008G172400.1 [Gossypium raimondii] (166) --51-+ | /-63-+------100-----+ | | | | | /----- Gh_A12G1443 [Gossypium hirsutum] (180) | | | | \-53-+ | | | | \----- Cotton_A_31060_BGI-A2_v1.0 [Gossypium arboreum] (155) | | | | | | | | /----- Ciclev10017220m [Citrus clementina] (135) | | | |---------57--------+ | | | | \----- Eucgr.A01720.1.p [Eucalyptus grandis] (140) | | | | | | | \------------------------- Thecc1EG011327t1 [Theobroma cacao] (157) | | | | | | /----- Cotton_A_04739_BGI-A2_v1.0 [Gossypium arboreum] (55) | | /--58-+ /-91-+ | | | | | \----- Gh_A01G0578 [Gossypium hirsutum] (81) | | | | /-100+ | | | | | | /----- Gorai.002G083400.1 [Gossypium raimondii] (158) | | | | | \-93-+ | | | |------100-----+ \----- Gh_D01G0589 [Gossypium hirsutum] (174) | | | | | | | | | \--------------- Thecc1EG046858t1 [Theobroma cacao] (185) | | | | | | | | /----- EcC040891.10 [Eucalyptus camaldulensis] (132) | | | | /-63-+ | | | | | \----- EcS615500.10 [Eucalyptus camaldulensis] (153) | | | \--------100--------+ | | | \---------- Eucgr.K00803.1.p [Eucalyptus grandis] (159) | |--------100--------+ | | | /----- Neem_22985_f_3 [Azadirachta indica] (28) | | |--------------94--------------+ | | | \----- Neem_11123_f_6 [Azadirachta indica] (152) | | | | | | /----- Gorai.010G253000.1 [Gossypium raimondii] (46) | | | /-97-+ | | | | \----- Gh_D06G2201 [Gossypium hirsutum] (123) | | | /-100+ | | | | \---------- Gh_A06G1779 [Gossypium hirsutum] (140) | | |---------100--------+ | | | \--------------- Cotton_A_04961_BGI-A2_v1.0 [Gossypium arboreum] (187) | | | | | \------------------------------------ Thecc1EG030163t1 [Theobroma cacao] (110) | | | | /----- Ciclev10006315m [Citrus clementina] (74) | |------------------------56------------------------+ | | \----- Eucgr.K00332.1.p [Eucalyptus grandis] (160) | | | \-------------------------------------------------------- evm.model.supercontig_3.55 [Carica papaya] (136) | | /----- Thecc1EG016428t1 [Theobroma cacao] (16) \---------------------------91--------------------------+ \----- Eucgr.E00851.1.p [Eucalyptus grandis] (73) Root part of tree: /------------------------------------------------------------------ XP_013628635.1 [Brassica oleracea] (1) | |------------------------------------------------------------------ GSBRNA2T00112174001 [Brassica napus] (53) | |------------------------------------------------------------------ XP_009134506.1 [Brassica rapa] (150) | |------------------------------------------------------------------ GSBRNA2T00153494001 [Brassica napus] (186) | | /----- Csa07g002980.1 [Camelina sativa] (2) | /-100-+ | | \----- Csa05g093780.1 [Camelina sativa] (97) | /-58-+ | | | /----- Carubv10018233m [Capsella rubella] (58) | | \-100-+ | /--51-+ \----- Cagra.0483s0079.1.p [Capsella grandiflora] (94) | | | | | \---------------- Bostr.13158s0169.1.p [Boechera stricta] (59) | /-60-+ | | |---------------------- Csa16g003790.1 [Camelina sativa] (49) | | | | /-100-+ \---------------------- 867626 [Arabidopsis lyrata] (51) | | | | /-98-+ \--------------------------- KFK35358.1 [Arabis alpina] (176) | | | | | \--------------------------------- (216) | | | | /----- (283) | | | | | /--51-+----- evm.TU.contig_29502.1 [Carica papaya] (179) | | | | | /--68-+ | \----- Eucgr.D02360.1.p [Eucalyptus grandis] (191) | | | | | | | | /----- Gh_A07G1272 [Gossypium hirsutum] (5) | | | | | | | | | |----- Gorai.001G155700.1 [Gossypium raimondii] (89) | | | |-100-+ | | | | |----- Cotton_A_34309_BGI-A2_v1.0 [Gossypium arboreum] (114) | | | | | | | \------------67------------+ \----- Gh_D07G1383 [Gossypium hirsutum] (193) | | | | /-70-+ |----------- Thecc1EG005177t1 [Theobroma cacao] (19) | | | | | | | | /----- orange1.1g034546m [Citrus sinensis] (21) | | | |-100-+ | | | | \----- Ciclev10024111m [Citrus clementina] (143) | | | | | | | |----------- Neem_11104_f_1 [Azadirachta indica] (62) | | | | | /--55-+ | \----------- Eucgr.E00069.1.p [Eucalyptus grandis] (169) | | | | | | | \-------------------------------------------- AA32G00127 [Aethionema arabicum] (100) | | | | | | /----------- XP_013619456.1 [Brassica oleracea] (63) | | | | | | | | /----- GSBRNA2T00104241001 [Brassica napus] (96) | | \------------------91-----------------+-100-+ | | | \----- XP_009128504.1 [Brassica rapa] (192) | | | + | \----------- GSBRNA2T00113232001 [Brassica napus] (154) | | | | /---------------- AT1G01380.1 [Arabidopsis thaliana] (7) | | | | | | /----- Araha.11664s0005.1.p [Arabidopsis halleri] (18) | | |----93----+ | | | \----- 878325 [Arabidopsis lyrata] (120) | | | | | | /----- Cagra.1968s0081.1.p [Capsella grandiflora] (22) | | | /-100-+ | | /--70-+ | \----- Carubv10011382m [Capsella rubella] (39) | | | | | | | | |-100+ /----- Csa17g001840.1 [Camelina sativa] (54) | | | | | | | | | | \-100-+----- Csa14g001750.1 [Camelina sativa] (129) | | | | | | | | | \----- Csa03g001830.1 [Camelina sativa] (138) | | | | | | | \---------------- Bostr.5325s0057.1.p [Boechera stricta] (128) | | | | | | /----------- 676747518 [Sisymbrium irio] (20) | | | | | | | /-99-+ /----- GSBRNA2T00007881001 [Brassica napus] (23) | | | | \-100-+ | | /-70-+ | \----- XP_013627900.1 [Brassica oleracea] (118) | | | | | | | | |--98-+ /----- Rsa1.0_00069.1_g00011.1 [Raphanus sativus] (61) | | | | | | | | | | | |----- XP_013603708.1 [Brassica oleracea] (75) | | | | \----100---+ | | | | |----- XP_009118810.1 [Brassica rapa] (112) | | | | | | | /--70-+ | \----- GSBRNA2T00065061001 [Brassica napus] (146) | | | | | | /-100+ | | |---------------------- Tp1g00910 [Thellungiella parvula] (44) | | | | | | | | | | | |---------------------- KFK42528.1 [Arabis alpina] (87) | | | | | | | | | /-70-+ | \---------------------- Thhalv10009233m [Eutrema salsugineum] (150) | | | | | | | | | | | \--------------------------- AA1G00082 [Aethionema arabicum] (139) | | | | | | | | | |--------------------------------- XP_010556590.1 [Tarenaya hassleriana] (45) | | | | | | | | | \--------------------------------- XP_010544429.1 [Tarenaya hassleriana] (178) | | | | | | | | /----- Csa13g056270.1 [Camelina sativa] (10) | | | | | | | |-------67-------+ /--70-+----- Csa08g053430.1 [Camelina sativa] (47) | | | | | | | | | | | \----- Csa02g002230.1 [Camelina sativa] (194) | | | | /-89-+ | | | | | | /----- Carubv10003403m [Capsella rubella] (85) | | | | | \-100-+ | | | | /--88-+ \----- Cagra.1372s0017.1.p [Capsella grandiflora] (124) | | | | | | | | | | | \---------------- Bostr.7365s0058.1.p [Boechera stricta] (30) | | | | | \--97-+ | \-------89------+ /----- 327672 [Arabidopsis lyrata] (37) | | | /-100-+ | | | | \----- AT4G01060.1 [Arabidopsis thaliana] (164) | | \----94----+ | | \----------- Araha.21051s0001.1.p [Arabidopsis halleri] (160) | | | |------------------------------------------------------- Tp6g01080 [Thellungiella parvula] (12) | | | |------------------------------------------------------- Thhalv10029104m [Eutrema salsugineum] (15) | | | | /----- XP_013610245.1 [Brassica oleracea] (26) | | /-100-+ | | | \----- GSBRNA2T00123528001 [Brassica napus] (130) | | /-84-+ | | | | /----- GSBRNA2T00091199001 [Brassica napus] (116) | | | \--95-+ | |------------------100-----------------+ \----- XP_009111414.1 [Brassica rapa] (182) | | | | | \---------------- Rsa1.0_15346.1_g00001.1 [Raphanus sativus] (67) | | | \------------------------------------------------------- KFK30682.1 [Arabis alpina] (151) | | /----- RrC26450_p1 [Raphanus raphanistrum] (72) \--------------------------100-------------------------+ \----- Rsa1.0_00187.1_g00016.1 [Raphanus sativus] (111) |