PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676747518 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 9570.93 Da PI: 8.5169 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5.1e-11 | 31 | 69 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +T+eE++l+ + k+ G + W++Ia +++ gRt++q+ +w 676747518 31 MTQEEEDLICRMYKLVGER-WDLIAGRIP-GRTAEQIERFW 69 7******************.*********.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.0E-8 | 27 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.10E-7 | 30 | 69 | No hit | No description |
Pfam | PF00249 | 9.2E-10 | 31 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 32 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.4 | 32 | 69 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.79E-8 | 32 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:1900033 | Biological Process | negative regulation of trichome patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MDKQRKPKHP KTNVASSSEE VSSLEWEEIA MTQEEEDLIC RMYKLVGERW DLIAGRIPGR 60 TAEQIERFWV MKNHRRSQLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676747518 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519518 | 1e-88 | AY519518.1 Arabidopsis thaliana MYB transcription factor (At1g01380) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632735.1 | 2e-46 | MYB-like transcription factor ETC1 isoform X2 | ||||
Swissprot | Q9LNI5 | 3e-36 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | V4MWM4 | 3e-44 | V4MWM4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418418.1 | 6e-45 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 5e-38 | MYB_related family protein |