PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1968s0081.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 10043.4 Da PI: 6.5267 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 2e-09 | 38 | 74 | 6 | 44 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +eEd+l+ + k+ G + W++Ia +++ gRt++++ +w Cagra.1968s0081.1.p 38 QEEDDLICRMYKLVGER-WDLIAGRIP-GRTAEEIERFW 74 8***************9.*********.********999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.5E-6 | 32 | 80 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.179 | 37 | 74 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-11 | 38 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.48E-6 | 38 | 74 | No hit | No description |
Pfam | PF00249 | 3.7E-8 | 38 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.57E-8 | 38 | 77 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:1900033 | Biological Process | negative regulation of trichome patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MDTQRKPKHL KTNPTTIVAS SSDQEVSSLE WEEIAMAQEE DDLICRMYKL VGERWDLIAG 60 RIPGRTAEEI ERFWVMKNHR RSQLR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1968s0081.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519518 | 1e-104 | AY519518.1 Arabidopsis thaliana MYB transcription factor (At1g01380) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306065.1 | 8e-58 | MYB-like transcription factor ETC1 isoform X1 | ||||
Swissprot | Q9LNI5 | 3e-40 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | R0IP83 | 2e-56 | R0IP83_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1968s0081.1.p | 3e-57 | (Capsella grandiflora) | ||||
STRING | XP_006306065.1 | 3e-57 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 1e-42 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1968s0081.1.p |