PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04739_BGI-A2_v1.0 | ||||||||
Common Name | F383_09793 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 77aa MW: 8869.58 Da PI: 3.9851 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.8 | 1.7e-10 | 29 | 71 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++++E+ l ++ +++ G + W +Ia +++ gRt++++ +w++ Cotton_A_04739_BGI-A2_v1.0 29 LQFSEDEETLVIRMFNLVGER-WGLIAGRIP-GRTAEEIEKYWNT 71 579******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.7E-7 | 27 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-9 | 30 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-13 | 30 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-8 | 30 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.63E-8 | 31 | 71 | No hit | No description |
PROSITE profile | PS50090 | 6.934 | 31 | 73 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MAESEYSSSE NASTDSNSIE EQSKQDLELQ FSEDEETLVI RMFNLVGERW GLIAGRIPGR 60 TAEEIEKYWN TRYSTSQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641035.1 | 2e-49 | PREDICTED: MYB-like transcription factor ETC1 | ||||
Swissprot | Q9LNI5 | 2e-15 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A0B0N2G0 | 4e-48 | A0A0B0N2G0_GOSAR; Transcription factor CPC-like protein | ||||
STRING | Gorai.002G083400.1 | 6e-47 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 3e-17 | MYB_related family protein |