PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7880_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 10620.1 Da PI: 9.6105 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.7e-07 | 2 | 52 | 5 | 45 |
-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwq 45 T++E++++++ ++ G + +W++Ia +++ gR ++++ +w RrC7880_p1 2 TEQEEDIILRMYRLVGDRkwcnlcisfyfRWDLIAGRVP-GRQPEEIERYWI 52 9**************************************.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.26 | 1 | 51 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.54E-4 | 1 | 51 | No hit | No description |
SuperFamily | SSF46689 | 9.72E-5 | 2 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-6 | 2 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 2 | 52 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MTEQEEDIIL RMYRLVGDRK WCNLCISFYF RWDLIAGRVP GRQPEEIERY WIMRNSDSFA 60 EKRLQLHHSS SHKNNKLHRP RPSVYPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF188211 | 2e-47 | KF188211.1 Brassica villosa BVTRY-1 (BVTRY-1) mRNA, complete cds. | |||
GenBank | KF188212 | 2e-47 | KF188212.1 Brassica villosa BVTRY-2 (BVTRY-2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468907.1 | 3e-46 | PREDICTED: transcription factor TRY-like | ||||
Swissprot | Q8GV05 | 6e-36 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A398AGG5 | 1e-44 | A0A398AGG5_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6ACQ6 | 2e-44 | A0A3P6ACQ6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E1I7 | 1e-44 | M4E1I7_BRARP; Uncharacterized protein | ||||
STRING | Bra022637.1-P | 2e-45 | (Brassica rapa) | ||||
STRING | Bo2g046050.1 | 4e-45 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 4e-30 | MYB_related family protein |