PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_31060_BGI-A2_v1.0 | ||||||||
Common Name | F383_25983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 75aa MW: 8579.47 Da PI: 4.1069 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.2 | 1.4e-11 | 20 | 61 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++ ++++E+ l+++ +++ G + W++Ia +++ gRt+++++ +w Cotton_A_31060_BGI-A2_v1.0 20 KLDFSEDEETLIIRMFNLVGER-WSLIAGRIP-GRTAEEIQKYW 61 5789******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.48 | 15 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.3E-8 | 19 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.18E-9 | 22 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-10 | 22 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.90E-9 | 23 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-13 | 23 | 63 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MADMDGSSVD SKEESSEDSK LDFSEDEETL IIRMFNLVGE RWSLIAGRIP GRTAEEIQKY 60 WASRFSYNNP MPNLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964005 | 1e-32 | JX964005.1 Gossypium hirsutum clone NBRI_TRANS-274 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635393.1 | 7e-49 | PREDICTED: MYB-like transcription factor ETC1 | ||||
Swissprot | Q9LNI5 | 4e-15 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A0B0MQ85 | 5e-47 | A0A0B0MQ85_GOSAR; Transcription factor CPC-like protein | ||||
TrEMBL | A0A2P5XBK1 | 2e-46 | A0A2P5XBK1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G172400.1 | 7e-46 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 4e-15 | MYB_related family protein |