PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g024230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 77aa MW: 9173.43 Da PI: 10.424 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.3e-08 | 2 | 40 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 T++E++l+ + ++ G + W++Ia +++ gR ++++ +w Csa18g024230.1 2 TAQEEDLIFRMYRLVGDR-WDLIAGRIP-GRQPEEIERYWI 40 99**************99.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 5.47E-6 | 1 | 39 | No hit | No description |
SMART | SM00717 | 0.0068 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.278 | 1 | 47 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.4E-7 | 2 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-7 | 2 | 40 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-10 | 2 | 40 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MTAQEEDLIF RMYRLVGDRW DLIAGRIPGR QPEEIERYWI MRNSEGFAEK RRQLHSSSSH 60 KHTKPLRPRF SIYPSN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g024230.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY161286 | 6e-81 | AY161286.1 Arabidopsis thaliana TRIPTYCHON mRNA, complete cds. | |||
GenBank | AY519523 | 6e-81 | AY519523.1 Arabidopsis thaliana MYB transcription factor (At5g53200) mRNA, complete cds. | |||
GenBank | BT024672 | 6e-81 | BT024672.1 Arabidopsis thaliana unknown protein (At5g53200) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482708.1 | 1e-50 | PREDICTED: transcription factor TRY-like | ||||
Swissprot | Q8GV05 | 7e-46 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | D7MSV5 | 5e-44 | D7MSV5_ARALL; Uncharacterized protein | ||||
STRING | XP_010482708.1 | 5e-50 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 3e-48 | MYB_related family protein |