PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10017220m | ||||||||
Common Name | CICLE_v10017220mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 117aa MW: 13773.6 Da PI: 9.3154 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.3 | 3.1e-12 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E+ l+++ ++ G++ W++Ia +++ gRt++++k +w Ciclev10017220m 66 KLEFSEDEETLIAKMYNLVGKR-WSLIAGRIP-GRTAEEIKKYWT 108 678*******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.163 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-9 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 67 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-14 | 68 | 109 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-9 | 68 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-8 | 68 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MKLQTFKQYA EQVKVHKQTL FNLQIPFEPI SFTIYNIFMA ELHRHTSDDN NSVHSREPKQ 60 PNQYSKLEFS EDEETLIAKM YNLVGKRWSL IAGRIPGRTA EEIKKYWTSR YSSTNE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006469704.1 | 9e-53 | transcription factor CPC-like | ||||
Refseq | XP_024047396.1 | 9e-53 | transcription factor CPC | ||||
TrEMBL | V4U4D5 | 9e-82 | V4U4D5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006447522.1 | 1e-82 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 2e-17 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10017220m |
Entrez Gene | 18050456 |