PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10024964m | ||||||||
Common Name | CARUB_v10024964mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10841.3 Da PI: 8.4952 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.2e-09 | 38 | 77 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T++E++l+++ k+ G + W++Iar++ gR +k++ +w Carubv10024964m 38 MTEQEEDLIYRMYKLVGDR-WDLIARRVV-GREAKEIERFWI 77 7****************99.*********.*********995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.4E-6 | 34 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.31E-5 | 37 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 38 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-8 | 38 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.79E-7 | 39 | 77 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 88 aa Download sequence Send to blast |
MENTDRFHLC RPHGHKQSKF TQYDFQEVSS IKWEFINMTE QEEDLIYRMY KLVGDRWDLI 60 ARRVVGREAK EIERFWIMRN SDHFSRK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation by direct binding to the cis-acting regulatory elements of GL1, thus suppressing the expression of GL1. {ECO:0000269|PubMed:17933793}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10024964m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295837.1 | 4e-60 | MYB-like transcription factor TCL1 | ||||
Swissprot | D3GKW6 | 8e-41 | TCL1_ARATH; MYB-like transcription factor TCL1 | ||||
TrEMBL | R0HTK4 | 9e-59 | R0HTK4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295837.1 | 2e-59 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30432.1 | 3e-43 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10024964m |
Entrez Gene | 17890522 |
Publications ? help Back to Top | |||
---|---|---|---|
|