PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 11143.7 Da PI: 4.5113 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 7e-10 | 20 | 83 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT.....................-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....................tWktIartmgkgRtlkqcksrw 44 ++ ++++E+ l+++ +++ G + +W++Ia +++ gRt+++++ +w Gh_D12G1561 20 KLDFSEDEETLIIRMFNLVGERwvlvcvldfltkkepmlksfcRWSLIAGRIP-GRTAEEIQKYW 83 5789*************************************************.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.284 | 15 | 87 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.2E-4 | 19 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.39E-5 | 20 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-8 | 22 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.15E-6 | 23 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-11 | 23 | 85 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MADMDGSSVD SKEESTGDSK LDFSEDEETL IIRMFNLVGE RWVLVCVLDF LTKKEPMLKS 60 FCRWSLIAGR IPGRTAEEIQ KYWASRFSYN NPMPNPS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438425.1 | 6e-44 | PREDICTED: uncharacterized protein LOC105764416 | ||||
Refseq | XP_016736086.1 | 4e-44 | PREDICTED: MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A0D2U1A2 | 1e-42 | A0A0D2U1A2_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NAJ7 | 8e-43 | A0A1U8NAJ7_GOSHI; MYB-like transcription factor ETC1 | ||||
STRING | Gorai.008G172400.1 | 2e-43 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 8e-12 | MYB_related family protein |