PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017480m | ||||||||
Common Name | EUTSA_v10017480mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 11543.1 Da PI: 9.9509 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 36 | 75 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T++E++l+ + ++ G++ W++Ia ++ +R ++++ +w Thhalv10017480m 36 MTEQEEDLIFRMYRLVGNR-WDLIAGRVA-RREANEIERYWI 75 79*****************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0047 | 32 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-4 | 35 | 74 | No hit | No description |
Pfam | PF00249 | 4.4E-7 | 36 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-6 | 37 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-10 | 37 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.993 | 37 | 74 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:1900033 | Biological Process | negative regulation of trichome patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MDNTNRLRRL RSRKQIKFTR YDSEEVSSME WEFISMTEQE EDLIFRMYRL VGNRWDLIAG 60 RVARREANEI ERYWIMRNCD YFSNKRRQHS LN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | RLRRLRSR |
2 | 7 | 14 | RRLRSRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15604688, ECO:0000269|PubMed:19818620}. | |||||
UniProt | MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017480m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY234411 | 4e-64 | AY234411.1 Arabidopsis thaliana hypothetical protein (At2g30420) mRNA, complete cds. | |||
GenBank | AY519520 | 4e-64 | AY519520.1 Arabidopsis thaliana MYB transcription factor (At2g30420) mRNA, complete cds. | |||
GenBank | AY649255 | 4e-64 | AY649255.1 Arabidopsis thaliana hypothetical protein (At2g30420) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410097.1 | 3e-61 | MYB-like transcription factor TCL1 isoform X1 | ||||
Swissprot | B3H4X8 | 3e-44 | TCL2_ARATH; MYB-like transcription factor TCL2 | ||||
Swissprot | Q84RD1 | 3e-44 | ETC2_ARATH; MYB-like transcription factor ETC2 | ||||
TrEMBL | V4LM02 | 6e-60 | V4LM02_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410097.1 | 1e-60 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30424.1 | 1e-46 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017480m |
Entrez Gene | 18026657 |