PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 327672 | ||||||||
Common Name | ARALYDRAFT_327672 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 9205.46 Da PI: 5.7376 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5.1e-10 | 34 | 74 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE++l + +k+ G + W++Ia +++ gRt+ ++ +w 327672 34 NMSQEEEDLVCRMHKLVGDR-WELIAGRIP-GRTAGEIERFWM 74 689***************99.*********.**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.9E-8 | 31 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-6 | 34 | 75 | No hit | No description |
Pfam | PF00249 | 9.7E-9 | 34 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-11 | 35 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.156 | 36 | 77 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.09E-7 | 36 | 75 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MDNHRRTKQP KTNSIVTSSS EGTEVSSLEW EVVNMSQEEE DLVCRMHKLV GDRWELIAGR 60 IPGRTAGEIE RFWMMKIEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, including endoreplication, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. May have pleiotropic effects on flowering development and epidermal cell size through the regulation of endoreduplication. {ECO:0000269|PubMed:18305006}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 327672 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118043 | 1e-115 | AK118043.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL19-27-F14. | |||
GenBank | BT005611 | 1e-115 | BT005611.1 Arabidopsis thaliana clone U50786 putative myb family transcription factor (At4g01060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002874998.1 | 3e-52 | MYB-like transcription factor ETC3 isoform X1 | ||||
Swissprot | Q9M157 | 7e-36 | ETC3_ARATH; MYB-like transcription factor ETC3 | ||||
TrEMBL | D7M4Z5 | 8e-51 | D7M4Z5_ARALL; Myb family transcription factor | ||||
STRING | fgenesh1_pm.C_scaffold_6002892 | 1e-51 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.1 | 1e-40 | CAPRICE-like MYB3 |
Link Out ? help Back to Top | |
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Phytozome | 327672 |
Entrez Gene | 9308983 |